Scaffold Ga0114997_10108087

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10108087
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1689
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F046006	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_101080871	F000720	GAGG	MKMILNKEDTIVRAKIPDRMMSTTFTLPIDDRKVVGIVNYTADTNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKELADTLSQDNIIGQMVNYFTKNVEDIIMGVPIDKKQRMLSTDPYASQMKE*
Ga0114997_101080872	F046006	GGAGG	VKEYSPPLAKYINTGLLMIVWFFCLSLLVVNFRYIAKLDNTIDTMWHEIEQVKDTNIKLYQFIEEHENDFK*
Ga0114997_101080874	F004988	N/A	LKRRTENVPKLIETICPRCDGNGFIKIPPVIATVGDKATEMDCPMCEEIITHMGQRITTHNGYVMLPTEHTRKNVEGGRESKIKWSGETLPEVGKE*