Scaffold Ga0114997_10066842

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10066842
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2263
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023213	Metagenome	211	Y
F023716	Metagenome	209	Y
F105880	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_100668423	F105880	GAG	MNWEKKMRIRKRIVRTAISFLSMFLSPEDAKELFEELRDIAEKHKKH*
Ga0114997_100668425	F023213	GAG	MPFKVGDMLKYHHPSSADDEQMDLYHFGKDYLDGKLALVLEKSVLNGYGTYDYFCYIDGDRMWISEDVLKEVEADEN*
Ga0114997_100668426	F023716	GGGGG	MKRRKSWDVKPEPLFRVPISASINGYIEGVSTRGEPTVKVGDLVKYIMPDDWEFHAIDAPIFTDETALGVIRSINWMLIETSKGAYYAPEAEVYWGINGSTTKHTHDSLEMANAV*