Scaffold Ga0114997_10052411

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10052411
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2618
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F007611	Metagenome / Metatranscriptome	348	Y
F025154	Metagenome	203	Y
F029277	Metagenome / Metatranscriptome	189	Y
F103909	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_1005241110	F103909	AGGAG	MRDYSITRKEGEWYNAKVTDSFGVDHQNYFEHAHEANDWIMYVWAKELPPLTDEEREELLANAIHDCKQIDAESGRRAIL*
Ga0114997_1005241112	F029277	N/A	MNREELKRLFLTFPTLDIPEKKQIIVDYNNNLYWPGYGSVEVLRDGPDGYSSFKSHQENPFLFVSEREEFASGEYELIVK*
Ga0114997_100524113	F025154	N/A	MSPWDMVAKLGIYTDEQIDEMTWAECEEILNQEE*
Ga0114997_100524114	F001802	N/A	MKTIKHLKNDYVQLGNQIYRPYKVCDVPNNFGCLEFNEKEGISEWFNYKGYTYLFDKMAKS*
Ga0114997_100524115	F007611	N/A	MKKKWITVLDYETSRVYQYKVAIHKHAEDYITFKGHRLSNVEWMEHQNNTPITN*