Scaffold Ga0114997

Basic Information
Taxon OID	3300009425 Open in IMG/M
Scaffold ID	Ga0114997_10037326 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009425 Open in IMG/M

Scaffold ID

Ga0114997_10037326 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3195
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3195

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.235	Long. (^o)	-150.0691	Alt. (m)	Depth (m)	79
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

75.235

Long. (^o)

-150.0691

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F016900	Metagenome	244	Y
F037478	Metagenome	168	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_100373261	F037478	GAGG	MASIKDIQNQIDNNTFDPSKLNRKQKQAVDEAIRRGLITGPSMSKLQKERAGAAKDAATMDEAVKNPIGVRLQQQGSSLDGRSEAVLAGDLIGSITPYVMMRKKIFSAAKSKVPGDKSTGLFARTKMFSNFSDKLTARLPGRFKLLGGLTKLLAKVADPTIGRVFASPLGKAEVYSVLGGTAGAGAGSVTYDMLNETAGVAAMDAIASDMENMSPKEVDTDMMANAADSLFTAFMWNAGAAAAAPVILKGFGKIGRLMIGAKSKDAKELVNIARDKGLPLPMVMTAQEGVGLLGGFAAKYFKVLGIMPFINGIGKEALQGAEQAAARNYLNTSVLNYGPLIKTGMLSATVWKQADEAFKQNSNLINASYKAFDTLADTIGNPKVIPTGHVKVMAKNYVDELSMKYPGLRGYAEDTMGNIDMKALEKLQGTGDPLALFFRYMNKIDDFVTPKQYKGMMETLNRAISETGYENIRPTLWSIREALENDLNSFGSAITKETFMKDDAFKASYEALSKTSKPAAEANLNMVLKESEKLKDKLYGANDTFSTLMNFYQRANATKIFREYNATTFTNKALAGIGGMEKKKAQRFFNDLANDVFTRGDSTAIKQFRQLLGADKITSKKTGKLIGVTKGGGEALYNAAKARWMFNSFYKGFDSASSPAGRTMIDEIMNESTVRAGINGTVDVMESMVQKGTGTDQVLDFSINKVKLGNNI
Ga0114997_100373262	F016900	N/A	RARNREASLNAAVDHMKFVNENAVEDRPDRTGGIIQIRGADGRLRNYKGYTLKDGTKQIAAGIGPDGREQFIPVSQGGPIADSDGQLIGQYENFLEQNSVDKRLFDIQDVLGNRYNALSVTRDVLKTLNQVDESGDKVKAGAALAIDQFTRRLSGVAKEVFGFEVSGMDIDALKQKVSELQADEYAAIDRDPDLSDEGKKAAKKLLSSERLIKEAEKKISGRLSGLSRPEQEKLAVQEVTLTYALANTFKDQDRLTQRDVNAAKEIVNIFSLTRSSKDVRASIEAIGRQLESDIRRQESLYTVAGGLENTLKDLRRLKNFEVFEGEGGITSQLAQDLSLEELEKQLNTIEVN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114997_10037326

Overview

Ecosystem & Geography

Associated Families

Sequences