Scaffold Ga0114997_10027107

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10027107
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3844
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F036920	Metagenome	169	N
F059862	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_1002710710	F036920	GGCGG	MGRPRKSVRAMSLSIDAKMHKMLIELAEKEGYTMSHIVNMALYEYKPIRELDVYRDWWKCDQRDCMALNPPAEEKCKECGQKALHMIIKEHNDRMLKYK*
Ga0114997_100271072	F059862	N/A	VKYGETLNFSLDKQMERVVEVLALSALLQANPNKKVEKRLREIAFPLEIEL*
Ga0114997_100271079	F001227	AGGA	MAARRGPKRTARRKRSFSINLLETGAGLAFLDAANAGTAAQSFIKGDLKGGLDTLSSAFKTNKQDMIKIGAGTLAAKLVLGSLGGSKVLGAIGPLKLRA*