Scaffold Ga0114997_10012292

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10012292
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6030
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003230	Metagenome	499	Y
F006446	Metagenome / Metatranscriptome	373	N
F026156	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_1001229210	F003230	N/A	MKDEDKTFENEVVIDFKRAKDDRGLNDLERIIEKLRNNIRDLLSMNTQYKTELANQIVKINKLEQEVKDLKKEKSNYYNVS*
Ga0114997_1001229213	F026156	AGGAG	MGKKIPISKLTSIKNRFNDLRFQGLEESISNKEQFVHSGTGFHLRKNKVLKDKDIYQSDEEFQEAYNNYEKDADYTGKAYLRMCRKYRGKEYNYLVTVEDLPDRS*
Ga0114997_100122929	F006446	N/A	MLVRDLQQILGQFTDKFNKGMGKVEGKGNAIMYARVYVDTGNNRLSEIQKIEAHENTLIGATEGVRVVLKLIPEKKSKIIL*