Scaffold Ga0114997_10010053

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10010053
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6789
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N
F006870	Metagenome / Metatranscriptome	363	Y
F007087	Metagenome / Metatranscriptome	358	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_100100533	F004166	N/A	MKTLLLLILVIPLISCSDHQTNDSWGSYATNKETQKQEFWFTSYKTRDACIADMSWQLEGRDDPNKKRISNWHTMPYGCHFMSNNKWLSMYYYLVYRDEGLGCLWESSNPNVRIKYSVTLKTFVNAPEQGRCILGD*
Ga0114997_100100534	F002915	AGG	MRKLLLLLLTIPVIGQSEETFTNEQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDKNMVKQSEKSKGAE*
Ga0114997_100100536	F007087	AGG	MKKLLLIALIIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATRTLQVKDDLIVIDAMTYKSKTFDYGAIKGSSKYVKDDTQIVLETTQVSNECDTALLNVKLNRSSGMIESTSKRIGACDGSSFTTSTKFKGKCN*
Ga0114997_100100537	F006870	N/A	MKKMSHILLLVLSLILTNKASSFETKLSPQGSDKYNLSIKGDTKSSEKNLRDVFQNKVNEICGTRFEIISIKMEYESEEGAKINVLNGTFKCFVKSQM*