Basic Information | |
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Taxon OID | 3300009425 Open in IMG/M |
Scaffold ID | Ga0114997_10010053 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6789 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 75.235 | Long. (o) | -150.0691 | Alt. (m) | Depth (m) | 79 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002915 | Metagenome / Metatranscriptome | 521 | Y |
F004166 | Metagenome / Metatranscriptome | 450 | N |
F006870 | Metagenome / Metatranscriptome | 363 | Y |
F007087 | Metagenome / Metatranscriptome | 358 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114997_100100533 | F004166 | N/A | MKTLLLLILVIPLISCSDHQTNDSWGSYATNKETQKQEFWFTSYKTRDACIADMSWQLEGRDDPNKKRISNWHTMPYGCHFMSNNKWLSMYYYLVYRDEGLGCLWESSNPNVRIKYSVTLKTFVNAPEQGRCILGD* |
Ga0114997_100100534 | F002915 | AGG | MRKLLLLLLTIPVIGQSEETFTNEQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICGDKNMVKQSEKSKGAE* |
Ga0114997_100100536 | F007087 | AGG | MKKLLLIALIIPNFVLAEDFKLVCEGEESTFRNDVLENTSKATRTLQVKDDLIVIDAMTYKSKTFDYGAIKGSSKYVKDDTQIVLETTQVSNECDTALLNVKLNRSSGMIESTSKRIGACDGSSFTTSTKFKGKCN* |
Ga0114997_100100537 | F006870 | N/A | MKKMSHILLLVLSLILTNKASSFETKLSPQGSDKYNLSIKGDTKSSEKNLRDVFQNKVNEICGTRFEIISIKMEYESEEGAKINVLNGTFKCFVKSQM* |
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