Scaffold Ga0114997_10005451

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10005451
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9684
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019554	Metagenome / Metatranscriptome	229	N
F021405	Metagenome	219	N
F045366	Metagenome / Metatranscriptome	153	Y
F094416	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_1000545110	F045366	AGG	MTNILTPEQVSRADEAEPHEILLAIHKRVVDTEKLMISYRNHAKNLELSLGMLTERIVSLEEKIESAKEKT*
Ga0114997_1000545112	F021405	AGGAG	MSETSEELLDVDEEKLKYRINYIKENLLQMSNKLREEIPEDLTDQDLTEDNVFRNWIIINSIYDAANRDDADQGFNRMLYFLFDKSKGNIARLVNNYDIDIKLNGAGQLEDIKLVVMETETDETNDE*
Ga0114997_100054513	F019554	AGG	MSLDRLKEISLFEGKSLDEIFNVIFKQSLEEREEAMSTFKKFREMVKDNEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLDLEMESKDSVNANDILDLLDREGIAPKRFMPKSDDEKENDPEESDQSIVEFPQLNKKV*
Ga0114997_100054514	F094416	N/A	MFEVISVIFIILSVGLSIALYRSINRLSFYEDIYGDMHGRLGDLNENIQGVLSREIYTNDSIIKSFVGQLQEISYYLQQVDENYKFNTLGEEVDES*