Scaffold Ga0114997_10000875

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10000875
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25029
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080513	Metagenome / Metatranscriptome	115	N
F103910	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_1000087517	F080513	GGA	LKSEIYPKDSSSRQSHELYELTDIDLLQLYALLNPSEIIKEFGRRSRCEKSIYNLIHKYRLDRPLKARQYLKKIILAACPEEIGFEDWEILLKNKLSYVRAEALMRMWKRIDKHESFWKIE*
Ga0114997_1000087520	F103910	GGAG	MKIETLNKEAREICQKAYKKQKDHFHNDDFVDDYLQFCKATQYKDTSAENFMVYSKIYGGTSAQKDRQFQSSNNLGGRMYAHNRMMKAVDSEKLTHAFIEDNRVEMMRRMTHANRG*