Scaffold Ga0114997_10000539

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10000539
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30993
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (19.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017048	Metagenome / Metatranscriptome	243	Y
F031650	Metagenome / Metatranscriptome	182	Y
F049219	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_1000053911	F049219	N/A	MLVSENDNRFAKQLKTLEEGVTTLDNRVAALDDKVTHVIQMNSELMIQTNENYRDIRSTMDEHRTELKKQIKQIHGRYSTRCQLIGFGVGLSAWTLFMAWVMWA*
Ga0114997_1000053928	F017048	N/A	MSSYNYEPSKSSLRADTVVEFVNRSLLDFKMTEIPGMGPASISKFGDHGIYTPAQIVAKFLSFVDAEDVQAQEVCERFYNWANPIMGKANTHNLTFAMANYAGEHGLFNFDN*
Ga0114997_1000053930	F031650	N/A	MDTEMPTITAEQFNQIKQEYLDAIPEGDALKVELKSHNKDQKARHAKIYQYMRENNVMSTDIGGVTFEREEKTTVPAVSLKTLEEIIENPAVVEAYKRDYAKTKESLKVRKPKRPRIE*