NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114994_11125971

Scaffold Ga0114994_11125971


Overview

Basic Information
Taxon OID3300009420 Open in IMG/M
Scaffold IDGa0114994_11125971 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038851Metagenome / Metatranscriptome165N
F088932Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0114994_111259711F088932N/AMANSWYYREMGSRNKKTGKLSYYNVTVTDYTVVDCECPAR
Ga0114994_111259712F038851N/AMKIPKITKPWSNEMYEYNDYIANFMKMEIETQINDNKDNWDTLNELIDLCGEVKYGDGYTIEDLHKGCLKALENVENYWLNNEWSYFVSKGLVNDIDLKFVGYGK*

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