Scaffold Ga0114994_10299573

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10299573
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1072
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030251	Metagenome	186	N
F046022	Metagenome	152	N
F077805	Metagenome	117	N
F092744	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_102995731	F092744	AGGAGG	MATITTLETFTAKNHPTISVELSKLTNRKGENLYLVSFLDMMNSQEITLGRYHSLTSAKEGFDLHKKAAQWGELYA*
Ga0114994_102995732	F046022	GAGG	MKVNRQILTARALQDIQTKTAAQRAVDPVDKTAKNLIWKQIFDAQLKGESDD*
Ga0114994_102995733	F030251	N/A	MVMLSTDSFPPVRMATFPAQQREISMVKRTPFIGTPLWLIFERDGEPEPQEIARFRDFYLANDCFDTLVEEAKNEG*
Ga0114994_102995734	F077805	N/A	SIRVRQNIVPCEITFGTRKMAETFAGITYGSKIERVYTDGELFDLWSQGQIDTGAW*