Scaffold Ga0114994_10176642

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10176642
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1442
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_101766421	F034394	N/A	MVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNILILDNSAGDKIEIWKGETDSWENVVGQDQWYHCEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTEVPLDVADAVIKMTAIDIMNTSFRMDEIPSGGSVSPSESKKYWQEDIELCISNRRETFVIP*
Ga0114994_101766422	F087902	N/A	MTYTNHNVKDIAASGTVKAGHGVMVAVYVTKAGASGDKVVFHNGVDSSATVEFTVYGEGVQHVQDVFRRFEAGIYAEVTGSTAKYIIVYK*
Ga0114994_101766423	F016619	N/A	MAIAIVQNADHKSLTGKTLSIQAELTSKLKSTIVDVTYGGSDNYATNGNVVDLSLGSRISTVIGAQILHCSAGLLLQYVPAAAGAAATGKIKCFGQKPTDATTTVIALEELDNADTAVNSMTIRIRIIGY*