Scaffold Ga0114994_10170379

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10170379
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1471
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022908	Metagenome / Metatranscriptome	212	Y
F025320	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_101703791	F025320	N/A	TTDHLSGKTITAVTVDFAVNGTDFSSTEMGPLGAVQAALATMTQEATPIIITKLRSDGANNGQVFDMVFEGEFGTDTYDGSNSEAFAAYLQTVLRLLTSVGAGPVNLNSATVVAATAASF
Ga0114994_101703792	F022908	N/A	MPTHLQEAIKIVTSPDSQLRDKTPRIYAMPKDEHMPKGFTNLKRMRYLSHDVCGGRNIKRWLWRDYNPELILQQPPFDRYEDQSEVFTLIRHPEERWWAGIKDMFYFMPWYGWWANDKIMEQWPHFGRGTLRYHDIMEQIKPQHLIKCDDGLNDRIIKFAKDNGLLCFGNIPHEKALRHTKPDIKKLEDKGVKELKAWLKENPDRQQQLDDYLEPDWQYWNKVEEQD*