Scaffold Ga0114994_10167319

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114994_10167319

Scaffold Ga0114994_10167319

Overview

Basic Information
Taxon OID	3300009420 Open in IMG/M
Scaffold ID	Ga0114994_10167319 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1486
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	67
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049222	Metagenome	147	Y
F074029	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_101673193	F074029	AGGAG	MKGKFSAVGFFTKHLNNISKKLTGETTLGNLQTISSVRPRPLRQVQLASNVVNFLNERKNRNRNRRS*
Ga0114994_101673194	F049222	AGGAG	MYEVKISKQSKKTYNVKLVSWKGNEGVSFGKAFDVSKKKAEKEAKENADLYNAKIIREY*

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