Scaffold Ga0114994_10165498

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10165498
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1495
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F029595	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_101654982	F029595	GAG	MKCFESPSGMKDVMLWHKRQSIRDFIKQKPMFSQLMQASKQCMNAHPELKNNVKGAIQCETIHPQTLSNFSNFTFHTHPHNIPYPSETDKNTTNDLNKKYLLIGVVPQNKTYVFTNDDNFSKSIATI*
Ga0114994_101654983	F015413	N/A	MNSLSLEKQVNDLLNTPKFEQPEFEQLLPKGILGKDMLIGSAGTALSVQMGNIVGKFLPLGQLPTGTASILAGILLQKFGGSSSMLKKLSEGIIQGGIATAMTPFVSGLIPAQFSQEVKTEEVQKELNPLVKGVMW*
Ga0114994_101654984	F012639	AGGGGG	MSSNNSGLVLQCVATYAANAPIATVQACTMQTSPTVAVVNEMQVPLTENWIATDVYILLATAIAPTAAVNPVVSMDKNRGRQLVQTPPLSSMLITNNTRPRFSPQPIGFEGGSIIRMFATSTGLNAGAITTATFFVAISIV*