Scaffold Ga0114994_10119089

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10119089
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1794
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006200	Metagenome / Metatranscriptome	379	Y
F013232	Metagenome / Metatranscriptome	273	Y
F057685	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_101190892	F006200	N/A	MANNTEDWLEELVKKYSIPTEEIKEKRGVLNETQLNNLKNGKN*
Ga0114994_101190893	F057685	GAG	MGDNVDSLWTCGCGGLNAHWRTTCGACEEKEIMENKTPRKDLLKILHMIKEDFVMLQDGSWSLQYSDGTEIEASLDNVDKAIEIVNKDLYGK*
Ga0114994_101190894	F013232	N/A	MSDREIMNAKSGIPMWWKPGISFLKEDWIKHPDLKQFRNKPSWASDCECSSPTLVELWEHDSCVRGRIDTTVCIKCNEVKSLSIVR*