Scaffold Ga0114994_10078826

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10078826
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2249
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → Hologalegina → IRL clade → Trifolieae → Trifolium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017048	Metagenome / Metatranscriptome	243	Y
F031650	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100788262	F017048	GGA	VYLNKLDDMCKKMSEFNYQPSKSSLRADTVVEFVNRSLLDFKMSDIPGMGPASIQKFGDHGIYTPAQIVAKFLSFVDSEEVSAQDVCERFYNWANPIMGKANTHNLTFALANYSGEHGLFNYE*
Ga0114994_100788263	F031650	N/A	MNVDMPSISAAEFGDIKRAYIDDSVVGDALKQQLKAHNKVQNERKKKIHTYMRDNNIMSEDIGGHTFEREEKTSVKVNMKTLEEIIDNPADLEQYKREHSTTTESLKIRKPKRQRTEE*