Scaffold Ga0114994_10069691

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10069691
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2405
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F003678	Metagenome / Metatranscriptome	474	Y
F005882	Metagenome / Metatranscriptome	387	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100696911	F003678	N/A	MNQILLYSSFFCSILALILCFYACARVGTLLSASKGLDWDAIANITGDLGAIKKTIQTLNNRLNGMNSPKLQDQELMLQL
Ga0114994_100696913	F000613	AGGA	MPLVKKRLSVASGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTLNFNVNNAEFARDASVSPIVTGEPFGWNGNYVMNDMVTQGAVRNRPVITFTNGTASTRTIDVAIFIGG*
Ga0114994_100696915	F005882	N/A	AIANITGDLGAIKKTIQTLNNRLNGMNSPKLQDQELMLQLLQKQPNQATNGKMTNVGG*