Scaffold Ga0114994

Basic Information
Taxon OID	3300009420 Open in IMG/M
Scaffold ID	Ga0114994_10056546 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009420 Open in IMG/M

Scaffold ID

Ga0114994_10056546 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2699
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2699

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)	Depth (m)	67
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

73.2247

Long. (^o)

-150.2247

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014790	Metagenome / Metatranscriptome	260	Y
F034715	Metagenome / Metatranscriptome	174	Y
F059364	Metagenome / Metatranscriptome	134	Y
F069051	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100565461	F034715	N/A	ETEEKDWYCGTCEHGPMMDNDTNCTRCGEKHSATHRVEEMTGWEDEDIESEVEEIF*
Ga0114994_100565462	F059364	GGAGG	VKTLLISGCSYGIVYSEIESELKDIFEVDRIVNLSSAGASPDRQIRVVIEWIAQNGKPDMVIMPVSHYNRFDLPIAKNFDPLHNLHLKASWQWKINKDAVDTNTVSIDTLKTFMKTGAMVYQIEHTEHDKLFVKLITFQAYLELNKIRHLIFDTGNYYEKQWMEYLSIDDENNSGYQPGMKKRDLIENSPGIYRLLSFCSNVWMYEQLTEDEKRNYVQWTDGNSAEGPLPYPLRQKTVNQLPHEYQQALNEDTATINHRKETVVKLMKHLHKEGAIHG*
Ga0114994_100565464	F069051	N/A	MNHDVELFSDKNFRPDDYRWDLHKNGKLLNILYYGGTFGTFLKYFLERFSTKTPDMTVSPFTDIGTSHALSRKDFSGLIQAYHQSFINDNKGETNLPVCIIVPSKKKHYLYLKKGQWSRSGPQKVTPDDLWKNALGEMPERIRNYANNIVKLYDIKDTAHFSWIPKFIVRDWYKLEFLRNLEDTYNYQWFEAFKGHEFFKGQRVFELDLGAFFDWETFIENITGLNDMFDLSLDFDQQAEMKEIFNKGLSLDVVRQECNVAEDILERGLDTDLRRLDVATEAFIYAEMERKNDFIQMPLTNRFFRDTEEMHQFVEYYPNHYKAMNPNMPKFNGIPNPYHLHKNK*
Ga0114994_100565465	F014790	N/A	VLLLRITKGVEQMQKQIENKIQEFAKSTGLTERVTMSHGTLYVLLLQPERCDFFHNVVRTFYKDNINPEGGVDMHPVGDEFAFDFVEGDKDNYHAENGVWSEFAEEEMFNNMDDEDESPAFPSYNEIPDEVDVMLNLQD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114994_10056546

Overview

Ecosystem & Geography

Associated Families

Sequences