Scaffold Ga0114994_10049409

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10049409
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2906
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F022658	Metagenome / Metatranscriptome	213	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100494091	F022658	N/A	NVNSVDTANFNHALERYEKEYEKALQLMNFYDLYQDAPEGPTTKLEENWTADENFFNNNRRWF*
Ga0114994_100494092	F051963	AGGAG	MALSNLPLVDKAKIVTYLREVAKIQTPIIEVSANYPSEDSTIAYGLYVDDVTENSRSVNQLAIQNCGTMYDAVDEFNILYISFQNDPQAPVILNAINNLAGNVNFFDGYTSVEYNRDVTIGNKSEIHTYTFNLTRLEFNNAYQS*
Ga0114994_100494094	F003807	AGGA	MTDSNDVWLKTDDEKLRSLIGDEAKMIPMLDNMGATIRQLKAKQQFRLALLNQLLESQTGD*
Ga0114994_100494096	F078735	N/A	MQIDTIGSRYGLLPSEVIKRADSFDLFIMDAALTFEKYHNDKSSTGKAPIPDYTTDELIAIKGK*