Scaffold Ga0114994_10027437

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10027437
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3983
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F020020	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100274372	F020020	N/A	MKKYLIEFTLVNGSKEEVELVTDRLQWSIDQWSRNRAVSSHTILSESKNSSKQMLLG*
Ga0114994_100274374	F001222	N/A	MKRLKELISMVTEAAKINFAGHSFLLKVDTNEDPNKKGVKIQFIPTEFGSLTPTQQNDIAIELEERLEIGLDEYDLRVERDRNLKDKTIIGFFIYIEYFDKIIRKALSDQNPEAPEASEVPEV*
Ga0114994_100274375	F003188	N/A	VIDLKKRIRQTLNSISPLSYRIKVRELNKDSMDKKLFIEVIKQMRSIEERRDFMQEEIGMDMTTYEDQFFTVIENLMKMHFSKEQLALIQMYLYQLVPDTEWDGTITIEKNKKEETVPFKQPSDVWEVISKYIK*