Scaffold Ga0114994_10022483

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10022483
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4434
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030877	Metagenome	184	N
F040865	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100224831	F040865	GGAGG	MYYNLDIVAIDGPVFSGSFKSIYPMAEKIVYHLGSNFAAARGYAVSQDGVCTAMIAGCTWTDIL
Ga0114994_100224833	F030877	GAGG	MKKLLLAVSVFVLASCTASISIKAQEFNGDPGAQPLADAKPLSPNKDKDAPIYPDTVQTATMGCSMLHKFSEVQEKWGERPLFSGIGLQLVVPPNVYGAPAKRIKRPMTLYVNQETGTWTLVSFWTDNYACLVANGRDFVPGGSSFSDEGNL*