Scaffold Ga0114994_10016774

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10016774
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5168
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F051963	Metagenome / Metatranscriptome	143	N
F078735	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100167742	F051963	AGGCGG	MALSSLPLVDKTKIVTYLREVAKIQTPIIEVSANYPSEDSTIAYGLYVDDVTENSRTVNTLAVQQCGTMYDAVDEFNILYISYQNDPQAPVILNSVNNLAGNLNFFDGYTSVEYNRDVTIGNKSEIHTYTFNLTRLEFNNAYQS*
Ga0114994_100167744	F003807	AGGAG	MNDSNDVWLKTDEEKLRSLIGDEAKMIPMLDNMGQTVRQLKAKQQFRLALLNQLLESHNGKD*
Ga0114994_100167746	F078735	N/A	MQIDTIGKRYGMLPSQVIREADTFDLYIMDAAMSFENYYHKKANSKDGLAPVPDYTNEELLNIMGK*