Scaffold Ga0114994_10016484

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10016484
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5216
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F056888	Metagenome / Metatranscriptome	137	N
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_100164841	F007003	N/A	MINYFTKNIDEKKYNDIIQRIIMINGHDGTNNSGYKAWKNFEDNWELNIIPVTDQEDFKSYYEHLNVETSDGIAWGVTGMKVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRVYDSPEGRANTRAAAATVIVHDNWYGSKETIKVWIRWGMIWLPITIPFIPVKVAKE
Ga0114994_100164843	F056888	N/A	MNVSEVLDIDGSVDRSKKLVAGDKITIQSFKIKSVEEVGAEVVEIGTTDGLRHSFGKAIIGQAKSDYWKDVVEKCVDKDAADGLDAYVVEKEAEKTGRMMLCLSMFPPKN*
Ga0114994_100164848	F092887	AGGAGG	MVISKPIRKNKKNLTSKVVVERSRKISTRNRIINTLGMYTKGLPLTEIQYKGDIPSMGNLHHTIKFMVRAGEVDKEKCPHCSTTEIYKLHI*