Scaffold Ga0114994_10004368

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114994_10004368

Scaffold Ga0114994_10004368

Overview

Basic Information
Taxon OID	3300009420 Open in IMG/M
Scaffold ID	Ga0114994_10004368 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10274
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	67
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005495	Metagenome / Metatranscriptome	399	Y
F013639	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000436811	F013639	GAG	MKIDKEKLKKQIRAGKSSHDVAMSYGVAPSTIRRKAAELGLRFKGKSYWRKG*
Ga0114994_100043682	F005495	N/A	MLKWNRGGNAPVLNMKKYLITQDTICNGQRVSAGDVVDITEDEGFNLIACNKAEVYVEKPKAKKTERSVGLETSEVKAPKKRAKK*

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