Scaffold Ga0114994_10002315

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10002315
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13897
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005591	Metagenome / Metatranscriptome	395	Y
F015812	Metagenome / Metatranscriptome	252	Y
F029428	Metagenome / Metatranscriptome	188	Y
F031261	Metagenome	183	Y
F051470	Metagenome	144	N
F068823	Metagenome	124	N
F077786	Metagenome	117	Y
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000231513	F102056	GGAG	MNKEFEKELVELLNKYYNTNWDYVWEFIGDTIETNLWLGEEVSDDV*
Ga0114994_1000231514	F077786	AGGAGG	MMNKETYTYEVSEQSTDTRYFEIMSNRKLTEEEIHNAICMPDIQKEWDCVKEGGITATFKWTDFGEDSDMEIDSGEVSDE*
Ga0114994_1000231515	F031261	AGGAG	MRTKTYVMTVEKNSDEVLEQLNKLQQVKQSVSLMNRHSNRKHYVKCQGRWGRNNPNYFKGGCSGHSFCSLQNAVRWDVYIYQGGE*
Ga0114994_1000231516	F068823	GGAGG	MSRTYNTYYFEKLDVMDKLDEIGLLTRLLRIVYKEQGLETIKYLVCSKTNRKFDWFNDEMMTDIISDIEEGVSYEN*
Ga0114994_1000231517	F051470	AGGAG	MSNDNKWIHEYYDERWEHYFETLRKDIKDIGQVEAMADRMAMEDVYNLDMEG*
Ga0114994_1000231529	F029428	AGG	MAQIGSDEKPVTFRKSIYGKSNGGKGARPRPGFYTQQYKDNWDLIFGKKGEDNAKNEKE*
Ga0114994_100023154	F005591	N/A	MFECWLSLKSDPSILKPEGCMNLYFTSTTLDKEIEWTWTDMDKAYWNTWTPKKSDIKIVTRLNKEQKNQALDELWEDLQSSIQFTKDRNNARRREKRVASKK*
Ga0114994_100023158	F015812	GAGG	MSKTLYKRIDEICAREYVVNKLSVNKYRTFVDLLYDDLISWDNPLDVSEIDIIHRIHEHLSVMVSSSLVYPPIGTNHT*