Scaffold Ga0114994

Basic Information
Taxon OID	3300009420 Open in IMG/M
Scaffold ID	Ga0114994_10000616 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009420 Open in IMG/M

Scaffold ID

Ga0114994_10000616 Open in IMG/M

Source Dataset Name

Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24346
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24346

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)	Depth (m)	67
Location on Map

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Source Dataset Sampling Location

Location Name

Arctic Ocean: Canada Basin

Coordinates

Lat. (^o)

73.2247

Long. (^o)

-150.2247

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F023957	Metagenome / Metatranscriptome	208	Y
F034245	Metagenome / Metatranscriptome	175	N
F089156	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000061610	F022909	GGA	MVNIDNKEILRTFFDGEIGCIAYSDKWLPQLEEFCSIAKDLGYVSNESPEAMKVDEIQYHCMIHIPTKKIYAVAGVQYMPEYKEGYYRIWTRLCRIPNADIPMTKSRRYGRGEMPEFDGLLYFNCYWATQQENFKATFGTTLANKAYADSYVRSTNTITDYVARHWWKKKGIAEPEGITEFYKVPQVVWRMYFDKFKEL*
Ga0114994_1000061616	F023957	AGGAG	MSNKTPYEIRLELIQEARLILQAKASKPEYMPTTEEVISEAEKLNQFISRKPEAR*
Ga0114994_100006166	F089156	N/A	MASNEDCAYIDVYERLTAPYTAVLTEDTLAPLIEKLDLLEGLPAQILCFSWQMDRNYIVDYRIEQLLKAGNLVVCAGGNHDLPVLDISPVGVDGVIRVGGGKYNGYYQNWIDVYDVTLPNQPNSNEAVHTVCELMLDKELELEYTLDYYSDSSIRNAPWPLRLAQTPSNEPKQYEFNPVSNLRYCAGEHLLPVRPGDHVSILYGGIELENFTDPSAITMGTDLPRGLTFDLGSGWLYGTFKFKTDMFHRFVAEINGQLFEYHMISCDADNKLSYEDVKHVYYNRPYNAPPFTMREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYREYE*
Ga0114994_100006167	F034245	GGA	MRGVTFSEFGGGKNVDMFVQAPIARPGTPMQEAVNTAKKIRETFTKDLYVWCDYSVQHIYSQLAMQAFKMAGIEFVAAIPVLSNGLTKRENDCSIAYCEQRSIPYELFHIDVEELFNGPELEKYGEMFPTTQPQMTIAGKFFDILPDCCIVYPGFMMHVSTSDWTRTKNNGFMPFVPHQTQEHAAEVFGKEYTNFQEHYVDMYTSWMFTPSYGEVLKSPTQDFVDNAPHRYYQYEIRTIKQAGFDIKPTTQKLIGIEMLKSHFGHDKYDSELRQRLAPFSPLTLKYASLQYTVKVDTKLKEMLEAHHETSFDFINKLF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114994_10000616

Overview

Ecosystem & Geography

Associated Families

Sequences