Scaffold Ga0114994_10000063

Overview

Basic Information

• Taxon OID: 3300009420
• Scaffold ID: Ga0114994_10000063
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53363
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 67

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017910	Metagenome / Metatranscriptome	238	Y
F051054	Metagenome / Metatranscriptome	144	N
F098024	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114994_1000006346	F098024	GAGG	VKPDKVEMVFDIIITSLKLGAGCILLYVMYQFTQGMGAWVELDRITR*
Ga0114994_100000635	F017910	GAGG	MSVTTISEDGKEYDDTFVTSIDSINILKEMLADDKTCDENGKLTEYGNKKLKRLQKKWCRENQHKNYNNEDYQK*
Ga0114994_1000006358	F051054	AGGA	MKSIKLTTFNDIGDCDRQDVNDLISALVRMGYEVWMTDDSVCFNLGNDDVIKDEKDLNKKSEKST*