Scaffold Ga0114982_1013784

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1013784
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2797
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088883	Metagenome	109	N
F095468	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_10137843	F095468	N/A	MELEKEIFPGKTLAQLVEEVYNKHKSQDSTIKSEILRLADMIDGPGDAIVLMPMIKGLLDSSLKNDEVLMKILSAFQKSAEAKDKSVEDGGLLSEKDIEQLMSEVTSMAPKKQLPSA*
Ga0114982_10137845	F088883	N/A	MTGIIAIVLWFATIFGAVVYNLYRKNKRLEEIVLNQSGFVNDTMSLLDEFNGLVNKIDMTMWVQSDPELLSLFETIKAIQLRVQQFTGRK*