Scaffold Ga0114982_1009427

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1009427
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3495
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003080	Metagenome / Metatranscriptome	508	Y
F019762	Metagenome / Metatranscriptome	228	Y
F024559	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_10094271	F019762	AGGAG	MELHESVRNTRIESTIKESEGFRVRMIKHEVLSPKGLFSIDLINETLDINGVVKDSSSYNYFMTKEELQRLAHALTL*
Ga0114982_10094273	F024559	GGAGG	MNVLIKLILGITLIVIAIILGPIAGIWSLNTLFPVLAIAYTWETWLAFFLLFGSITGLRFSSFKKG*
Ga0114982_10094278	F003080	AGGAG	MTTAKDLTDQLIERAKNLKEFVVEREFNHIPAGVVRFDIQHTVGESARIFVPALTQAEAEEMVDEWFKEEV*