Scaffold Ga0114982_1006549

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1006549
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4357
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F007691	Metagenome / Metatranscriptome	346	Y
F023834	Metagenome	208	Y
F031792	Metagenome	181	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100654910	F005558	AGGAG	MDQDTMYWSEIAQLTHTTQVERFNWCWCEDNEGNENPYSDCPKEGK*
Ga0114982_100654911	F093528	AGGAGG	MNEETTTTHVVTVVIQTGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKISLSSDTPEKSVNDVVKEIQEEAGE*
Ga0114982_100654912	F031792	AGGAGG	MGYEPELNDPIFYAEEKEEEIKCFSCSDTLDQDDIVWADEEGQIGKEGNDSAWCVSCLPSEKEGES*
Ga0114982_100654913	F023834	AGGAGG	MNKEYWQAKAELCRDLALIQIEDEDTEKEAGMNLMRMTYALSMVEAYSDGTGE*
Ga0114982_100654915	F095162	GGAGG	MENEKRLASAAKQAVYYRNYRRARDRALVKLAQAYPEAYKELLEKEKVSDEQEGKTWIDLDGSTISPRITARAKARGITLTQTNTDQGNNGGEA*
Ga0114982_10065499	F007691	AGAAGG	METINQLVNEIYEDNYSHIEFDDNMGGDCDCHIHTTLKTIVKYWHEGEGE*