Scaffold Ga0114982_1005709

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1005709
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4763
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009530	Metagenome / Metatranscriptome	316	Y
F017484	Metagenome / Metatranscriptome	240	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100570914	F093237	GAG	MTYKYNLGDTATMSNQELLNALLAKEVAPRTIVGTGYKNGRQVAIDYLKEMIAKENEVK*
Ga0114982_10057092	F009530	AGG	MTITYSLWQGSRLLSIDNIATDIKEIDTLINTLNASDIGKKIKFSANVMEIKVTK*
Ga0114982_10057095	F017484	GGAG	MSNVEIFRLNEQGAGWVSLNDATTAELLDLELAITFNAPMQMLCFKCHTPIPKGNVCVNHKDVKGAIYFG*