Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1005708 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1005708 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4764
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4764

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F017998	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F087181	Metagenome	110	N
F090305	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100570810	F017998	N/A	MNLERLDLEKYEALELERNRTIADPLYQQWMSELGVSSSYTDREGIIRANDLNSQYDYTSLAENKSTKFSVSSILSILK*
Ga0114982_100570812	F031098	N/A	MKTYYDIHILSYSGDTIIINGVSYSQMMQIARANPNCQKIEVVKEYSKKINKY*
Ga0114982_100570813	F003542	N/A	MSKVNFDYDLFSEKIGYDSVNKMYLIRVYDLLVFEMNTNPKPTWTGIMKKMLGDNPKDCNPSSYYSSVRRCLKEIGVCYFDTTKRCMVKGNNWDRFVSSEDWSWFIMRTGSCEYSTIIK*
Ga0114982_10057083	F087181	N/A	MSFGEIVFALIMSGILGLWVYGIIVSDGDTMRRIFWDNTAMGWIWREYFTKKKKAKQAPIPSFQSIPPPPARRLTAKKAAPKGFNTSSLNVPPLNHIGKPLVIQNWDRIAGMATMVFGKRWFVVGALHTSNGYECTLASSQSINTTTFYIYDTMYDSHRVSVYCGGRTEIMDVGVCKDPNRLLYELAYTFNEKFR*
Ga0114982_10057087	F090305	AGG	MLTIQNIEGLNDTVISGWKVTDAEACRPTKWLMTEHYCIRLNKYGEAAAILIDRWINPLTKQYHVYVCYEDFSNKIYEGAFTKRVIMDKGHFLKHMMGYITAEYEMRKQK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1005708

Overview

Ecosystem & Geography

Associated Families

Sequences