Basic Information | |
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Taxon OID | 3300009419 Open in IMG/M |
Scaffold ID | Ga0114982_1004938 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5200 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006844 | Metagenome / Metatranscriptome | 363 | Y |
F008305 | Metagenome / Metatranscriptome | 335 | Y |
F019826 | Metagenome / Metatranscriptome | 227 | N |
F020910 | Metagenome / Metatranscriptome | 221 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114982_100493811 | F006844 | AGGAG | MAKWDIEVIFEPTGTFMNFEYETDNEDEDSIFNEINNQLSIVPFLVEKNEEE* |
Ga0114982_100493814 | F019826 | N/A | MGFMRRSIRLAVSKEEKVANKMVALLSDFTLDLEAIGFYLAKGSPHIIYTRANEVLEAMQYNKEVDELDRGVYYGTK* |
Ga0114982_10049384 | F008305 | GGAGG | MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYVADVG* |
Ga0114982_10049385 | F020910 | GAGG | MWAKYTFVCDPFKCDSLLEFTARDGYGFPNGIVSMTCPCGREMQYVSVEDIESKFYEPVIKVTPPKVVKINTNPYN* |
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