Scaffold Ga0114982_1004938

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1004938
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5200
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F008305	Metagenome / Metatranscriptome	335	Y
F019826	Metagenome / Metatranscriptome	227	N
F020910	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100493811	F006844	AGGAG	MAKWDIEVIFEPTGTFMNFEYETDNEDEDSIFNEINNQLSIVPFLVEKNEEE*
Ga0114982_100493814	F019826	N/A	MGFMRRSIRLAVSKEEKVANKMVALLSDFTLDLEAIGFYLAKGSPHIIYTRANEVLEAMQYNKEVDELDRGVYYGTK*
Ga0114982_10049384	F008305	GGAGG	MLGYTYKDIQAFGNSLTWAIDTAKSQGEEQQYKQLLIVWDFFEGLLAEGYVADVG*
Ga0114982_10049385	F020910	GAGG	MWAKYTFVCDPFKCDSLLEFTARDGYGFPNGIVSMTCPCGREMQYVSVEDIESKFYEPVIKVTPPKVVKINTNPYN*