Scaffold Ga0114982_1004173

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1004173
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5775
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010684	Metagenome / Metatranscriptome	300	Y
F020171	Metagenome / Metatranscriptome	225	Y
F053291	Metagenome / Metatranscriptome	141	N
F095454	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100417315	F053291	GAG	MITTQELIDYIYDDNLIHFDDRDTSDDCDCYIHITLNTMIKYMEAIEC*
Ga0114982_100417316	F020171	GGAG	MEQFIDTLAEHITGAIQQEIAEHLFDQWSYNNLESGQDYAENQFMSFASDELKQQYNEYYGYIEGDEFLL*
Ga0114982_10041734	F095454	GGTGG	MDYNKIASILAQINLDALDLEEVEYLPSEFWTELEDGLTFAVFVNGGWAEPTEMGKSQLEFAWRTLCDMRDLDPEVMYDTPLDFFKAQQV*
Ga0114982_10041737	F010684	AGGAG	MNEYRVDVIFEPTGDYMHFKYEAESDNETDLVNEILSQLSIVSWKEEE*