Scaffold Ga0114982_1004155

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1004155
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5793
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F019325	Metagenome / Metatranscriptome	230	Y
F043940	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100415511	F000447	GAGG	MGYIEIFRMNDEGAGWVDLSEATPDEMFNIELGLLNEGALFTSPESD*
Ga0114982_100415520	F043940	AGG	MKNRFRAEIYDANKMNDVTIYSEQGIDKAYLTELAFSNRNKFFGDVRAYVYDTLKKTKTTALYLPSEVINFNRKNQLTRDELGL*
Ga0114982_10041555	F019325	AGGTGG	MTTLTESLFSTIVHDYHNGGVKSSYGLDAYTRKEILTYLIRSKGCECINCLDKENN*
Ga0114982_10041557	F001562	AGG	MEKTQFEKDLEIKESFIDLLNDIYPEVKIGYSTFTPAEILECCDPIAFAIGLVEHEDYLAEMENE*