Basic Information | |
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Taxon OID | 3300009419 Open in IMG/M |
Scaffold ID | Ga0114982_1003628 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6297 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F047646 | Metagenome / Metatranscriptome | 149 | Y |
F078236 | Metagenome / Metatranscriptome | 116 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114982_10036283 | F047646 | N/A | MERKKMSIMNSLREQAGLGGPAAVLANEMLVIRENYEQGQLTKEEYEFLLQEIASIRAQQDLASDEIACRWIVAAAEALIAVA* |
Ga0114982_10036286 | F078236 | GGA | MSLKHIIKHTETEIVFKCYATAAGGADVDISIQNDCTKSTQAYVAPTSIPDESGGAFVNYTGSRVYITGIWWGIKSGKQLDISRIIDTTPNPDTLHGHYYLMQTGFHDFHDFADRVYANKDLRLTFDGPGHCILRLRKEGWNPKVETAVFGPYDNETAVGS* |
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