Basic Information | |
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Taxon OID | 3300009419 Open in IMG/M |
Scaffold ID | Ga0114982_1003409 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6549 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (5.88%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003542 | Metagenome / Metatranscriptome | 480 | Y |
F017998 | Metagenome | 237 | Y |
F024555 | Metagenome / Metatranscriptome | 205 | Y |
F048784 | Metagenome | 147 | Y |
F087181 | Metagenome | 110 | N |
F090305 | Metagenome / Metatranscriptome | 108 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114982_100340910 | F090305 | N/A | MLTIRNIESLNLTKLGYWKVNDAEASRPTKWCMTEHYCIRLHRDGEAAAILIWRNINPLTKQYHVDVCYDDFTNKIYEGAFSKRVIMDKGHFLASMMGYIKAEHTLRNKK* |
Ga0114982_100340915 | F024555 | GGA | VKIIEIVNMLTIKNIEKLYKLNVGNWRIGKVETLNTSYLMQLYKYNSMETKQVNIERTPIGEGDTSLYELWFWDDGKPIRRLLRKCDFELGPLYVIKNIENMMNLK* |
Ga0114982_100340917 | F087181 | N/A | MSFGEIVFALVMSGIVGLWVYGIIITDGDTIRRILWDDTMLGWGWRKLFGEKKKAKQAPIPSFQSIPPPPVRTLTAKKAAPKGFNTSSLNVPPLNHIGKPLVIQNWDRLAGMAVMVFGRRWIVVQAFHASSYEFTLQTGGMTKSVTFSIYGDMYDSHRVSVY |
Ga0114982_10034092 | F048784 | N/A | MNQTTEKLVSIFNQDELAALMTAMGGYINTKSKQRRSTGIEVVAFNKIVDALLVANYMNAVEVVPKAGRVGVAEYKLAEAAGQY* |
Ga0114982_10034094 | F003542 | N/A | MPGNVLILNKQFLKIFTLKLGYMEYSYYLYYVIKLKDMSKVNFDYDLFSEKIGYDSQNKMYLIRVYDLLVFEMNTNPAPTWTGIMRKMLGDNPNNCNPSGYYSSVRRCLKEIGVCSFDTTKRCMVKGRNWDRFVSDEDWSWFIMRTGSCEYSTIIK* |
Ga0114982_10034096 | F017998 | N/A | MNLERLDLEKYEQLELERNNTIADPLYQQWMSELGVSSSYSDREGIIRANELNRQYEYSTLGKNKSPKFSVSSILSILK* |
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