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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009419 Open in IMG/M |
| Scaffold ID | Ga0114982_1002525 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7958 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (33.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F003714 | Metagenome / Metatranscriptome | 472 | Y |
| F010765 | Metagenome / Metatranscriptome | 299 | Y |
| F019449 | Metagenome / Metatranscriptome | 229 | Y |
| F042864 | Metagenome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114982_10025251 | F000957 | GAGG | MTSFRHLDGMLGLLSELYEINERILTGDILSNKAAINSKRMEKLLKHYHEALSEDGASDIRLEAYAAAGGWVGITYSYTFDGFEVAGSQVPRRA* |
| Ga0114982_10025254 | F003714 | N/A | MPNANHPYTETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRQWLDITNTTWVNLNKRGPYRRQK* |
| Ga0114982_10025255 | F042864 | N/A | MSTPIKPKAELVFDKAMHELLKRKVVDFRKAASLKDRDGCVKGLGSYALYGVDHTRGQLVVLASEPTAGDFNKYVTAKAKADVCSRYDQVVEYRDAGSHSNPKVTVLCWHLA* |
| Ga0114982_10025257 | F010765 | N/A | MSALPQPPTPDEIPVNFRDVGFGILIGSASWLVRYFCSTERQTLGYIARRTATAGLTSLLVGLGTKGYFSSEGLAFAAAGCAGYASPELVDLLLARIKAMKGKTAPKG* |
| Ga0114982_10025258 | F019449 | N/A | MTIETFTTVCVPGIASLAYFSAGIANLYTRNYAMAIMWLCYAVANVALLSTVLRK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |