Scaffold Ga0114982_1002036

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1002036
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9139
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F001754	Metagenome / Metatranscriptome	641	Y
F003291	Metagenome / Metatranscriptome	495	Y
F005389	Metagenome / Metatranscriptome	402	Y
F011393	Metagenome / Metatranscriptome	291	Y
F018718	Metagenome / Metatranscriptome	233	Y
F054034	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100203612	F011393	GAG	MPKGEQIAYNKCEHCNVELFTNDAGEYYPVVNRLDKHTLMRGEYIPIGNRFQYPRNWGKKKGATILLETRIADKIKVLEDTQSELSKLQACLEKVNEWDETILN*
Ga0114982_100203613	F000785	N/A	MNWAQDLLGPSKCNTIAFTFDTTEESLGWYDWDNIIWINLASCKRMIAVQKTILHEWTHAQQTYRWYNHYNLKYGYKNNPYEIQARENEKLVKRAYKKRK*
Ga0114982_10020362	F003291	N/A	MTINQTTEKLVSIFNQDELAALMTAMGGYINTKNKQRRSTGIEVVAFNKIVDALLVANYMNAEEIEVKPNANAPMGSAAYKAWEAMYDSDVLAHR*
Ga0114982_100203620	F054034	N/A	LEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVTYYKMYIAGGTSAMTEFIMIQTINTLDRMKAHLIYIHEKYITK*
Ga0114982_10020363	F001754	GGA	MVKTPYLYSVINDKNMNTIYNNFAASKMSNNPKFQVVVTFTDFMGKTHNIVCNNRKKLAEANQFLKMFKTESVKINQILSEYPVVLGKYPKKYHSEIKRELASAGFSAVSNFLIK*
Ga0114982_10020365	F005389	N/A	MANKSKATAKRGNIYETVSNNIQKITRPSGTVSYRVRVSEDGVMYSQYETSLKKAKALRNSWVG*
Ga0114982_10020369	F018718	N/A	MTLREYYVSKYPTDELGVELNETPTFTGLLNQLIVGGDVYKYIGVGDSIIRERLFEGLAEELNVKYDYVYELWLKN*