Scaffold Ga0114982_1001895

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1001895
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9560
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030090	Metagenome	186	Y
F033036	Metagenome	178	N
F050317	Metagenome	145	N
F072276	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100189515	F030090	N/A	MEDPRATQLKAQYNQVVMSVARNTYLKAQELIRDLNEAKIRDEDKNEIRLHLIKMVTTKPTEINKP*
Ga0114982_100189518	F072276	N/A	MSKTLIETSTKKRFATKFMVLENHKPTEESVVVFKDSEDSPNFLVIRYERDAEGKMVQRGTLEEVNEEQFKREHAPHANWDNTSLREYDQKFQDWRSSTLMQKLEQVGEDEV*
Ga0114982_100189527	F033036	N/A	MNYEIEDLQGLMNDLSTIGLSRKSLVFKTHYGFGEDLQGVNDGVTPLYITKEGADLMHDAKFGRRIKETTLAIIWSNWEKAPTRSWTETPLPAADLVESGLYRVGLFQSSPRMHFPGDLPPERVKMAYELLLDQILKIRFDEE*
Ga0114982_10018955	F050317	AGGAG	MQEEKYYIVAAGGYLPKPVVEEIVIKESEMAESEDDFSDFEDYKTYILEEAAAEFDQRFAKSIILTEAQAKEVSVYLTK*