Scaffold Ga0114982_1000351

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1000351
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24939
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (52.83%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F002406	Metagenome	562	Y
F006220	Metagenome	378	Y
F009266	Metagenome / Metatranscriptome	320	Y
F009750	Metagenome	313	Y
F010398	Metagenome	304	Y
F070110	Metagenome	123	N
F077288	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100035133	F077288	AGGA	MNSFVWIYFSKTGMGYEIKGSDAISGFDAFISMDGTYLIEYALVT*
Ga0114982_100035135	F001561	GGAG	MQTREQRLKYLNKTIDTLWHGVQDTKTGDYPKIVNLYKEVLKIEPKDRDAWENMVWLMWSLAINNKDTAWLLEAEKFARRYLSIMPNGYRSYEYVGMFYRSMIKDEKLAVRFYESAIRWKDAPESTHHSLISIREKSGDKLKAIGYCKMTLARFPNDPYTKSKLKTLTQN*
Ga0114982_100035137	F009750	N/A	MKEIITAISKHGTFKENKILRPHLMDRLGIRLMFPEGSQCILWTNGRKYYARCEAFGTLFTVNIPQKMGDDIWLRFKTQFEGNYSYEDI*
Ga0114982_100035140	F010398	N/A	MVYCSCKEIGMEISIEGSVEVNYHLVIDEDVFNECCEEAGLDPANFKKFTKAQWDELNPHLIQAVVDNVADIDYTEIHCESTVYADTLTIDDSDKMTTVYYEEDRKTGSVEIL*
Ga0114982_100035141	F070110	N/A	MLLDDYPIVIWFIKKSRNSYCLYDSCGQLVMRRDEKRKKDIYQYCEDNGIDLQEEF*
Ga0114982_100035144	F006220	AGGAG	MKKRKYVEELNLASGTEMMRASRQRPIVFKDKTKYTRKDKHKNRQDKSSGDSLFMG*
Ga0114982_10003516	F002406	N/A	MENIKWIRAMSDRLRDELSKEYDEETKDLIVRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE*
Ga0114982_10003518	F009266	AGAAG	MTDKERKILDKEIEYLCEQQDRVKAIREYTGINPGFTFLREVDIIESLYKSLLENRKYDKSTYFSCATSGWHVVYLRDKKTYKNGEKFNIKIFHTFVWSDNCE*