Basic Information | |
---|---|
Taxon OID | 3300009419 Open in IMG/M |
Scaffold ID | Ga0114982_1000135 Open in IMG/M |
Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 37165 |
Total Scaffold Genes | 87 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (79.31%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Ohio, USA | |||||||
Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002515 | Metagenome / Metatranscriptome | 552 | Y |
F004475 | Metagenome / Metatranscriptome | 436 | Y |
F004840 | Metagenome / Metatranscriptome | 421 | Y |
F017131 | Metagenome | 242 | Y |
F021757 | Metagenome | 217 | Y |
F045752 | Metagenome / Metatranscriptome | 152 | Y |
F095473 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114982_100013513 | F004475 | GAGG | MSNWTDELTDEQKQQVWDFIVFTVKEIREQIAVDILATSDLWAAKGLNKSRRTQKAFKISAAIARGQNEVDANQSN* |
Ga0114982_100013549 | F002515 | N/A | MKKTPEELRRLMELRRSNAASAVPNKKKYDRKKCQSQMLELRKERRSIND* |
Ga0114982_10001355 | F045752 | AGGA | MADPNQTPSRGDWVCPCSGCQKTVAAERKQLIDLFEKTKNDYLVYRGSSFNKDGTLFWAKDDAMAFAEGIDTVIELIKERMPKPKPKRQ* |
Ga0114982_100013553 | F004840 | AGGAG | MDYEYVITSAYDGEAPHWTQRYEKEYGAWENFFLFTDWGMANEYRTVNLYTPTGKCYTKLFYRNGTVKVVA* |
Ga0114982_100013556 | F021757 | AGG | MMTRKDYVAVAEILSDFKPLIADQFTFEDLVDEFADMFSADNPNFKLDKFREACNK* |
Ga0114982_100013569 | F095473 | GAG | MNCKVINCESTELIYSGTDAFMLGIPTETYCYKCANAYAQIDRVMSKVREDYLASVSTSTTSC* |
Ga0114982_100013579 | F017131 | AGGAGG | MAFPSTYNFNYYRGDTAEFVARPKNANNGSNFDLTDYDASFTIANQRGALGTQYDADAVVNETTDIVTCTITPTLGRELEAGTYVYDVQIDNGVQIYTLLTGTITVTDDITGAV* |
⦗Top⦘ |