Scaffold Ga0114982

Basic Information
Taxon OID	3300009419 Open in IMG/M
Scaffold ID	Ga0114982_1000135 Open in IMG/M
Source Dataset Name	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009419 Open in IMG/M

Scaffold ID

Ga0114982_1000135 Open in IMG/M

Source Dataset Name

Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37165
Total Scaffold Genes	87 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	69 (79.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

37165

Total Scaffold Genes

87 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

69 (79.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	Ohio, USA
Coordinates	Lat. (^o)	39.849	Long. (^o)	-81.036	Alt. (m)	Depth (m)	2500
Location on Map

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Source Dataset Sampling Location

Location Name

Ohio, USA

Coordinates

Lat. (^o)

39.849

Long. (^o)

-81.036

Alt. (m)

Depth (m)

2500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F004475	Metagenome / Metatranscriptome	436	Y
F004840	Metagenome / Metatranscriptome	421	Y
F017131	Metagenome	242	Y
F021757	Metagenome	217	Y
F045752	Metagenome / Metatranscriptome	152	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100013513	F004475	GAGG	MSNWTDELTDEQKQQVWDFIVFTVKEIREQIAVDILATSDLWAAKGLNKSRRTQKAFKISAAIARGQNEVDANQSN*
Ga0114982_100013549	F002515	N/A	MKKTPEELRRLMELRRSNAASAVPNKKKYDRKKCQSQMLELRKERRSIND*
Ga0114982_10001355	F045752	AGGA	MADPNQTPSRGDWVCPCSGCQKTVAAERKQLIDLFEKTKNDYLVYRGSSFNKDGTLFWAKDDAMAFAEGIDTVIELIKERMPKPKPKRQ*
Ga0114982_100013553	F004840	AGGAG	MDYEYVITSAYDGEAPHWTQRYEKEYGAWENFFLFTDWGMANEYRTVNLYTPTGKCYTKLFYRNGTVKVVA*
Ga0114982_100013556	F021757	AGG	MMTRKDYVAVAEILSDFKPLIADQFTFEDLVDEFADMFSADNPNFKLDKFREACNK*
Ga0114982_100013569	F095473	GAG	MNCKVINCESTELIYSGTDAFMLGIPTETYCYKCANAYAQIDRVMSKVREDYLASVSTSTTSC*
Ga0114982_100013579	F017131	AGGAGG	MAFPSTYNFNYYRGDTAEFVARPKNANNGSNFDLTDYDASFTIANQRGALGTQYDADAVVNETTDIVTCTITPTLGRELEAGTYVYDVQIDNGVQIYTLLTGTITVTDDITGAV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114982_1000135

Overview

Ecosystem & Geography

Associated Families

Sequences