Scaffold Ga0114982_1000005

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1000005
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134387
• Total Scaffold Genes: 209
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 142 (67.94%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014494	Metagenome / Metatranscriptome	262	Y
F036693	Metagenome / Metatranscriptome	169	Y
F039621	Metagenome / Metatranscriptome	163	Y
F047646	Metagenome / Metatranscriptome	149	Y
F071976	Metagenome / Metatranscriptome	121	Y
F073096	Metagenome / Metatranscriptome	120	Y
F083937	Metagenome / Metatranscriptome	112	Y
F095137	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_1000005171	F039621	AGG	MKYLIIFAIALAFIILIPCATIWSLNALFPALAIPLTFDTWCAALVLGGVVGGSTGFSFRKKD*
Ga0114982_1000005174	F036693	N/A	MYNKLKPRDPIAKDLRTPKYRMRVVESKVKYTRKSKHTKDNYGQYL*
Ga0114982_1000005189	F014494	AGG	MTTKHFECEECGANGKILLKGTDHQLEDIVYCPVCSADIYEEEDLDLED*
Ga0114982_1000005208	F047646	GGAG	MILEQLREVAGVGGPAAQLANELLVLTDKKAIGELNQEEFEYLVREIADVRAQQDLSNDEIACRWIVAAAQAVLAVV*
Ga0114982_1000005209	F073096	N/A	FLSGCSVILPIKHDPAMFDNLVQVKVAVDKLKCDNKDWTDAQNKITHLKVYTEMRKDPQANSVSQLGEAIEKAKQSNNKTFCESLLRINKTRIDVITDAWRGR*
Ga0114982_100000566	F083937	GAG	MGKTYLKNQKSYEEQSSGRSGKHANHTSGKKTGGMKTLNSYVEEDYEDPFQDDFGIEDSISIQHTKDDTTNTP*
Ga0114982_100000573	F071976	AGGAG	MKYRVIVNGVSFYTTGAAIKRGVGDSVSVNTVVRQLFENLFNAVGIASTMTVYDNKMNRVKYDVQISKV*
Ga0114982_100000599	F095137	N/A	MPQKRQRKYPEKQCPTCSKTFAKQGKYCSRACGNSRVFTTTAKAQMSNKIRQKINDDPEYKDKITSHIHPDIPIPPQQESPLGLNQFIAGGDLWTEID*