Scaffold Ga0114982_1000002

Overview

Basic Information

• Taxon OID: 3300009419
• Scaffold ID: Ga0114982_1000002
• Source Dataset Name: Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 175492
• Total Scaffold Genes: 195
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 148 (75.90%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: Ohio, USA
• Coordinates
  • Lat. (^o): 39.849
  • Long. (^o): -81.036
  • Depth (m): 2500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004924	Metagenome / Metatranscriptome	418	Y
F006506	Metagenome / Metatranscriptome	371	Y
F008493	Metagenome / Metatranscriptome	332	Y
F010472	Metagenome	303	Y
F010760	Metagenome / Metatranscriptome	299	Y
F028806	Metagenome	190	Y
F031871	Metagenome / Metatranscriptome	181	Y
F032651	Metagenome / Metatranscriptome	179	Y
F036696	Metagenome	169	Y
F040103	Metagenome / Metatranscriptome	162	Y
F089784	Metagenome / Metatranscriptome	108	Y
F099274	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114982_100000215	F040103	AGGA	MKNILDTLYSICIGIGKVRAASAMARAGMHEEAKAIMLAK*
Ga0114982_1000002159	F089784	AGGAG	MTIQLPYELLWGVDVAIKKLRPDANFQLEGTRFTQWTCPHGSEAPTWEEVMDQLRADEESANKWLSENANN*
Ga0114982_100000228	F010472	AGGA	MGHGNILHEVMTSGHSWAAERAQMALQVSEAVQNGQMSSDEAKEILADLISTDKLDQEATDQQVRAALVFGVTQLASFV*
Ga0114982_100000229	F006506	AGG	MKRLVTLLVVLALTGCANIMELIPSRWDVNQAKVITDLQQQTRNFDCKADQATQVNSIAKNVEWFDIYSQTKPTRDIAKLTKTVNATVKEYQERLAKGPVSPLYCDLKKKIIQQQVDIIAGSVQGRF*
Ga0114982_100000240	F028806	AGG	MFRPINPKWPVTSIFIIRYLLIGVDNVKIIAYNKRMDKYKDFPEQPKTMSEAEGEALFQNMLKQIAKFKPDEIIAVNRSGFSYAMWVAQILKLPLGAYWPKDGKLIAQDTSKRLVFVDDNILQGTTFLDTKQFMDGYQHEWRWAVLFSDWHTPEAVRNEIIQGARLPYFAEEPMWGSRKVSADYGVRYRDE*
Ga0114982_100000268	F008493	N/A	MTSELGDSYIGLTRKGTVTPVKAVLERWRKHKSRARNEDRRWALYVYLKTGGLDLGWTHTIIAIVRGRAEAYAYERELVKMAEPTLNDQYL*
Ga0114982_100000269	F031871	GGAG	MKTDHTMYIYKADRRKKSGERLVSTTVWRNRDAAEMAREVRELQYELYPTSKGFRIEFVATMKTVINLMSGKEVQIPHDTPRSCDPSSELYWSM*
Ga0114982_100000276	F099274	N/A	VLYYTLDTKEIAMAMVEGKRVQVGDTVSFKCDIEQCGTIYKIEGDRLFLESKYGFQGDYIGGQEKTIQSARDCWIEG*
Ga0114982_100000277	F010760	AGGAG	MLNVDKIVKVYNGRMGCMCGCNGKYSYTADGAVNHGPGYDVTASVNERSVRIMAKKILANPNVEFEDNYAFVEDRARNKMQVVYFKENQ*
Ga0114982_100000290	F032651	AGGAG	MQKVTVVDIAADGFYASEHMSGSCVKVTLQRGTETVTCGQILIWDEEYAEDCFEEWRDCALAGEEGYTYTA*
Ga0114982_100000291	F004924	AGGAG	MRDAILAKLAEVDDMLQAATLDGDKLTEMECFAELEGALHKLTEAVDYYVD*
Ga0114982_100000293	F036696	AGGAG	MSKALNKRISKAFDAIYSKGDNGLDYMDRHCEMDADLMQFFYDDAVDTLSKADKQRMADMLETVVADMAFDLV*