Scaffold Ga0114908_1094591

Overview

Basic Information

• Taxon OID: 3300009418
• Scaffold ID: Ga0114908_1094591
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1006
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114908_10945912	F066135	GGAGG	MNGLRIHSVNNIKVKREDYESFTTITVTVTDKTDQDFELTLFTDKGFVPDMEVQDGDS*
Ga0114908_10945913	F029404	GGAGG	METVDFVEVELGGDNWKITWDVSRRKKIKTTGEKYGLKYTTYSLTDLTPAQAYDIAMLQLEWLKKDQNYAI*
Ga0114908_10945915	F040869	AGGA	MKVFEQVYNELSLLQEENMDDLNIAEESLMAAMTFTMTNAPSVLNGLCLISNTFNGILAEYTLKDIQLKGE*