Scaffold Ga0114908_1094417

Overview

Basic Information

• Taxon OID: 3300009418
• Scaffold ID: Ga0114908_1094417
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1007
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004404	Metagenome / Metatranscriptome	439	Y
F023451	Metagenome	210	Y
F044192	Metagenome	155	N
F050670	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114908_10944171	F004404	N/A	SKIGKIINNFNDYLAKINKEIDLNEHSLAIHYDYDIAPLPDDIIDKANEREK*
Ga0114908_10944172	F050670	N/A	MKGKNKMPIEHYKGLEICIMYNDNQKPYYIVCKEFKEDPFWEIGGIQYNSIKQAKIDIDDDVYYIEREK*
Ga0114908_10944174	F044192	AGG	MYIDKYEIVSWSRKWNNGKQNKKAEITKSCYNEDHGMSGKKFLQLISDLDDAWHEHEGKDCVVHVSFEDPKERE*
Ga0114908_10944175	F023451	AGGA	MKNQKWIGFKKPKFIGIDYDCKGNPLIDWQEQLKLKIDRDTIGYDFKVVAYR