Scaffold Ga0114908_1082884

Overview

Basic Information

• Taxon OID: 3300009418
• Scaffold ID: Ga0114908_1082884
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1094
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029562	Metagenome	188	Y
F035967	Metagenome	171	Y
F042574	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114908_10828842	F029562	AGG	MKVGDLVRVSSTAVSINWKPEQGYLGLIASPVRLGADAQYVNVQSVKTGVALWVRAYRITPLNETEGAK*
Ga0114908_10828843	F035967	GGAGG	VKVGDLVKMKFGYSPVGVVTKVGYSVDHIVDVDPPFMATIVWADDGKSNERVRDLKVIV*
Ga0114908_10828844	F042574	N/A	VKVGDLVKSKFSFFEGQLGLIVAVDIWEESLIDKWHRVKLFCNGEDGTFCEHDMEVVKRCQENVKSDSNTLQSGSQRVTL*