Scaffold Ga0114908_1036243

Overview

Basic Information

• Taxon OID: 3300009418
• Scaffold ID: Ga0114908_1036243
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1835
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006447	Metagenome / Metatranscriptome	373	Y
F080240	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114908_10362434	F080240	GGAG	VYLVSGGKAMMSLLARIKPNIIFAILSITTLGLIISLMGYFMGQEGIITGAGVGSIVAVANLAHKILDNE*
Ga0114908_10362435	F006447	N/A	VVMTIAVSGMAVAVGLYFAVKDVATSTYNWPEPAEYQVTSEGLQTMGKKNEDYADGTESQTLSIRLGDGSRISTLRIKDVDLGRTGITKAFDVSPLTQAVTGATAYLWVGNLTITNSSFPTFKMETSQVANLTAGILADGHTMAATITNTVPDVVLESERLASTYEVDGSIVDRIQIHITGNSGAFVENLILDNVDAWNGEAYFSRMKIGTMTMNNSNQIGDGSGVDSASASWESSVEARNVWDTIQDRPIKVQ*